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  5. MA_10435713g0020

MA_10435713g0020


Description : SMG7 Nonsense-Mediated mRNA Decay protein


Gene families : OG0002555 (Archaeplastida) Phylogenetic Tree(s): OG0002555_tree ,
OG_05_0002119 (LandPlants) Phylogenetic Tree(s): OG_05_0002119_tree ,
OG_06_0006148 (SeedPlants) Phylogenetic Tree(s): OG_06_0006148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10435713g0020
Cluster HCCA: Cluster_485

Target Alias Description ECC score Gene Family Method Actions
AT1G28260 No alias Telomerase activating protein Est1 0.02 Archaeplastida
AT5G19400 SMG7 Telomerase activating protein Est1 0.03 Archaeplastida
Gb_21699 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.02 Archaeplastida
Gb_32124 No alias Protein SMG7 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os08g21350.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.03 Archaeplastida
Pp3c11_18290V3.1 No alias Telomerase activating protein Est1 0.02 Archaeplastida
Pp3c7_5420V3.1 No alias Telomerase activating protein Est1 0.02 Archaeplastida
Zm00001e009613_P002 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR018834 DNA/RNA-bd_Est1-type 249 596
IPR019458 EST1 112 236
No external refs found!