Description : DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana (sp|f4jxf9|nrpc1_arath : 444.0)
Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0006324 (LandPlants) Phylogenetic Tree(s): OG_05_0006324_tree ,
OG_06_0006832 (SeedPlants) Phylogenetic Tree(s): OG_06_0006832_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_10436091g0010 | |
Cluster | HCCA: Cluster_256 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00001p00152770 | evm_27.TU.AmTr_v1... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.04 | Archaeplastida | |
AT4G35800 | RNA_POL_II_LSRNA_... | RNA polymerase II large subunit | 0.04 | Archaeplastida | |
Cpa|evm.model.tig00000241.15 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.05 | Archaeplastida | |
Cpa|evm.model.tig00022075.5 | No alias | DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00022075.6 | No alias | DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
Cre03.g165750 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | Archaeplastida | |
GSVIVT01013491001 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | Archaeplastida | |
GSVIVT01025079001 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.04 | Archaeplastida | |
Gb_06029 | No alias | subunit 1 of Pol II RNA polymerase | 0.05 | Archaeplastida | |
Gb_21425 | No alias | subunit 1 of Pol V RNA polymerase | 0.04 | Archaeplastida | |
Gb_33197 | No alias | subunit 1 of Pol II RNA polymerase | 0.1 | Archaeplastida | |
LOC_Os02g05880.1 | No alias | subunit 1 of Pol V RNA polymerase | 0.02 | Archaeplastida | |
LOC_Os04g41490.1 | No alias | subunit 1 of Pol III RNA polymerase | 0.05 | Archaeplastida | |
LOC_Os04g48370.1 | No alias | subunit 1 of Pol IV RNA polymerase | 0.02 | Archaeplastida | |
MA_8720349g0010 | No alias | subunit 1 of Pol V RNA polymerase | 0.03 | Archaeplastida | |
Mp3g15530.1 | No alias | subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... | 0.07 | Archaeplastida | |
Mp4g14340.1 | No alias | subunit 1 of Pol II RNA polymerase | 0.03 | Archaeplastida | |
Mp7g16790.1 | No alias | subunit 1 of Pol III RNA polymerase | 0.02 | Archaeplastida | |
Pp3c15_5270V3.1 | No alias | nuclear RNA polymerase D1B | 0.04 | Archaeplastida | |
Pp3c17_3180V3.1 | No alias | nuclear RNA polymerase D1A | 0.02 | Archaeplastida | |
Pp3c17_4860V3.1 | No alias | nuclear RNA polymerase C1 | 0.04 | Archaeplastida | |
Pp3c1_32300V3.1 | No alias | RNA polymerase II large subunit | 0.05 | Archaeplastida | |
Smo110201 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.08 | Archaeplastida | |
Smo442419 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.05 | Archaeplastida | |
Solyc01g096390.4.1 | No alias | subunit 1 of Pol V RNA polymerase | 0.02 | Archaeplastida | |
Solyc08g080220.3.1 | No alias | subunit 1 of Pol IV RNA polymerase | 0.02 | Archaeplastida | |
Solyc11g072730.2.1 | No alias | subunit 1 of Pol III RNA polymerase | 0.03 | Archaeplastida | |
Zm00001e025206_P001 | No alias | subunit 1 of Pol V RNA polymerase | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Neighborhood |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004519 | endonuclease activity | IEP | Neighborhood |
MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
MF | GO:0004525 | ribonuclease III activity | IEP | Neighborhood |
MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
BP | GO:0006401 | RNA catabolic process | IEP | Neighborhood |
BP | GO:0006402 | mRNA catabolic process | IEP | Neighborhood |
BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
MF | GO:0010181 | FMN binding | IEP | Neighborhood |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Neighborhood |
BP | GO:0043248 | proteasome assembly | IEP | Neighborhood |
BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
MF | GO:0060090 | molecular adaptor activity | IEP | Neighborhood |
No external refs found! |