MA_10436091g0010


Description : DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana (sp|f4jxf9|nrpc1_arath : 444.0)


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0006324 (LandPlants) Phylogenetic Tree(s): OG_05_0006324_tree ,
OG_06_0006832 (SeedPlants) Phylogenetic Tree(s): OG_06_0006832_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436091g0010
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00152770 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 Archaeplastida
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.04 Archaeplastida
Cpa|evm.model.tig00000241.15 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 Archaeplastida
Cpa|evm.model.tig00022075.5 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00022075.6 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g165750 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
GSVIVT01013491001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01025079001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 Archaeplastida
Gb_06029 No alias subunit 1 of Pol II RNA polymerase 0.05 Archaeplastida
Gb_21425 No alias subunit 1 of Pol V RNA polymerase 0.04 Archaeplastida
Gb_33197 No alias subunit 1 of Pol II RNA polymerase 0.1 Archaeplastida
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
LOC_Os04g41490.1 No alias subunit 1 of Pol III RNA polymerase 0.05 Archaeplastida
LOC_Os04g48370.1 No alias subunit 1 of Pol IV RNA polymerase 0.02 Archaeplastida
MA_8720349g0010 No alias subunit 1 of Pol V RNA polymerase 0.03 Archaeplastida
Mp3g15530.1 No alias subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... 0.07 Archaeplastida
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.03 Archaeplastida
Mp7g16790.1 No alias subunit 1 of Pol III RNA polymerase 0.02 Archaeplastida
Pp3c15_5270V3.1 No alias nuclear RNA polymerase D1B 0.04 Archaeplastida
Pp3c17_3180V3.1 No alias nuclear RNA polymerase D1A 0.02 Archaeplastida
Pp3c17_4860V3.1 No alias nuclear RNA polymerase C1 0.04 Archaeplastida
Pp3c1_32300V3.1 No alias RNA polymerase II large subunit 0.05 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.08 Archaeplastida
Smo442419 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 Archaeplastida
Solyc01g096390.4.1 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
Solyc08g080220.3.1 No alias subunit 1 of Pol IV RNA polymerase 0.02 Archaeplastida
Solyc11g072730.2.1 No alias subunit 1 of Pol III RNA polymerase 0.03 Archaeplastida
Zm00001e025206_P001 No alias subunit 1 of Pol V RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 116 347
IPR007083 RNA_pol_Rpb1_4 6 109
No external refs found!