Description : RNA chaperone (RZ1|GR-RBP)
Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree ,
OG_06_0001149 (SeedPlants) Phylogenetic Tree(s): OG_06_0001149_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_10436424g0010 | |
Cluster | HCCA: Cluster_239 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00012p00103290 | evm_27.TU.AmTr_v1... | Organelle RRM domain-containing protein 2, mitochondrial... | 0.04 | Archaeplastida | |
AMTR_s00013p00256900 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.07 | Archaeplastida | |
AMTR_s00043p00170970 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
AMTR_s00114p00125610 | evm_27.TU.AmTr_v1... | Small RNA-binding protein 11, chloroplastic... | 0.03 | Archaeplastida | |
AT1G18630 | GR-RBP6 | glycine-rich RNA-binding protein 6 | 0.04 | Archaeplastida | |
AT2G37510 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.06 | Archaeplastida | |
AT3G23830 | GR-RBP4, GRP4 | glycine-rich RNA-binding protein 4 | 0.07 | Archaeplastida | |
AT4G13850 | GRP2, ATGRP2, GR-RBP2 | glycine-rich RNA-binding protein 2 | 0.04 | Archaeplastida | |
AT5G04280 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein with... | 0.03 | Archaeplastida | |
AT5G61030 | GR-RBP3 | glycine-rich RNA-binding protein 3 | 0.03 | Archaeplastida | |
Cre09.g392350 | No alias | Glycine-rich RNA-binding protein 2, mitochondrial... | 0.02 | Archaeplastida | |
Cre17.g725301 | No alias | No description available | 0.02 | Archaeplastida | |
Cre17.g729150 | No alias | No description available | 0.01 | Archaeplastida | |
GSVIVT01001672001 | No alias | Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
GSVIVT01014553001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01021024001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01025527001 | No alias | Organelle RRM domain-containing protein 2, mitochondrial... | 0.04 | Archaeplastida | |
Gb_11567 | No alias | Small RNA-binding protein 11, chloroplastic... | 0.04 | Archaeplastida | |
LOC_Os08g04440.1 | No alias | RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
LOC_Os12g31800.1 | No alias | RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
MA_14910g0010 | No alias | No annotation | 0.03 | Archaeplastida | |
Mp1g21200.1 | No alias | RNA editing factor (ORRM) | 0.05 | Archaeplastida | |
Mp3g06220.1 | No alias | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia... | 0.02 | Archaeplastida | |
Mp4g15980.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Pp3c12_23410V3.1 | No alias | glycine-rich RNA-binding protein 3 | 0.04 | Archaeplastida | |
Pp3c17_4050V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein with... | 0.04 | Archaeplastida | |
Pp3c4_6610V3.1 | No alias | glycine-rich RNA-binding protein 3 | 0.06 | Archaeplastida | |
Smo140819 | No alias | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
Smo406315 | No alias | Glycine-rich RNA-binding protein 2, mitochondrial... | 0.04 | Archaeplastida | |
Solyc03g071560.4.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Solyc10g051377.1.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Solyc10g081180.2.1 | No alias | RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) | 0.03 | Archaeplastida | |
Zm00001e005260_P002 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Zm00001e006287_P001 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.02 | Archaeplastida | |
Zm00001e012278_P001 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Zm00001e028481_P002 | No alias | RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) | 0.06 | Archaeplastida | |
Zm00001e033010_P001 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Zm00001e035491_P001 | No alias | RNA editing factor (ORRM) | 0.03 | Archaeplastida | |
Zm00001e040294_P001 | No alias | RNA editing factor (ORRM) | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001671 | ATPase activator activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
CC | GO:0005840 | ribosome | IEP | Neighborhood |
CC | GO:0005956 | protein kinase CK2 complex | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006412 | translation | IEP | Neighborhood |
BP | GO:0006413 | translational initiation | IEP | Neighborhood |
BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
MF | GO:0008047 | enzyme activator activity | IEP | Neighborhood |
BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
MF | GO:0019207 | kinase regulator activity | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
MF | GO:0019887 | protein kinase regulator activity | IEP | Neighborhood |
MF | GO:0030234 | enzyme regulator activity | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
MF | GO:0042393 | histone binding | IEP | Neighborhood |
BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
MF | GO:0051087 | chaperone binding | IEP | Neighborhood |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Neighborhood |
MF | GO:0060590 | ATPase regulator activity | IEP | Neighborhood |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0098772 | molecular function regulator | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No external refs found! |