AT5G20220

Description : zinc knuckle (CCHC-type) family protein

Gene families : OG0009455 (Archaeplastida) Phylogenetic Tree(s): OG0009455_tree ,
OG_05_0009828 (LandPlants) Phylogenetic Tree(s): OG_05_0009828_tree ,
OG_06_0010921 (SeedPlants) Phylogenetic Tree(s): OG_06_0010921_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G20220
Cluster	HCCA: Cluster_175

Target	Alias	Description	ECC score	Gene Family Method
Gb_41095	No alias	no hits & (original description: none)	0.07	Archaeplastida
LOC_Os01g51710.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e028179_P004	No alias	no hits & (original description: none)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0003730	mRNA 3'-UTR binding	IEP	Neighborhood
MF	GO:0003747	translation release factor activity	IEP	Neighborhood
MF	GO:0003913	DNA photolyase activity	IEP	Neighborhood
MF	GO:0004096	catalase activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005451	monovalent cation:proton antiporter activity	IEP	Neighborhood
CC	GO:0005777	peroxisome	IEP	Neighborhood
BP	GO:0006066	alcohol metabolic process	IEP	Neighborhood
BP	GO:0006415	translational termination	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Neighborhood
BP	GO:0006897	endocytosis	IEP	Neighborhood
BP	GO:0006995	cellular response to nitrogen starvation	IEP	Neighborhood
MF	GO:0008079	translation termination factor activity	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
BP	GO:0009637	response to blue light	IEP	Neighborhood
BP	GO:0009743	response to carbohydrate	IEP	Neighborhood
BP	GO:0009744	response to sucrose	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0009970	cellular response to sulfate starvation	IEP	Neighborhood
BP	GO:0010117	photoprotection	IEP	Neighborhood
BP	GO:0010155	regulation of proton transport	IEP	Neighborhood
BP	GO:0010218	response to far red light	IEP	Neighborhood
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEP	Neighborhood
CC	GO:0010319	stromule	IEP	Neighborhood
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015386	potassium:proton antiporter activity	IEP	Neighborhood
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015695	organic cation transport	IEP	Neighborhood
BP	GO:0015994	chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0015996	chlorophyll catabolic process	IEP	Neighborhood
MF	GO:0016168	chlorophyll binding	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0019751	polyol metabolic process	IEP	Neighborhood
BP	GO:0022411	cellular component disassembly	IEP	Neighborhood
MF	GO:0022821	potassium ion antiporter activity	IEP	Neighborhood
CC	GO:0030076	light-harvesting complex	IEP	Neighborhood
BP	GO:0030974	thiamine pyrophosphate transmembrane transport	IEP	Neighborhood
BP	GO:0031329	regulation of cellular catabolic process	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0032984	protein-containing complex disassembly	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Neighborhood
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Neighborhood
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Neighborhood
BP	GO:0034285	response to disaccharide	IEP	Neighborhood
CC	GO:0034357	photosynthetic membrane	IEP	Neighborhood
BP	GO:0034762	regulation of transmembrane transport	IEP	Neighborhood
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
CC	GO:0042579	microbody	IEP	Neighborhood
CC	GO:0042651	thylakoid membrane	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
BP	GO:0043487	regulation of RNA stability	IEP	Neighborhood
BP	GO:0043488	regulation of mRNA stability	IEP	Neighborhood
BP	GO:0043562	cellular response to nitrogen levels	IEP	Neighborhood
BP	GO:0043624	cellular protein complex disassembly	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
BP	GO:0044257	cellular protein catabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044434	chloroplast part	IEP	Neighborhood
CC	GO:0044435	plastid part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0045117	azole transport	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0046149	pigment catabolic process	IEP	Neighborhood
BP	GO:0046165	alcohol biosynthetic process	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0050897	cobalt ion binding	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051181	cofactor transport	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
CC	GO:0055035	plastid thylakoid membrane	IEP	Neighborhood
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Neighborhood
BP	GO:0071484	cellular response to light intensity	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
BP	GO:0072531	pyrimidine-containing compound transmembrane transport	IEP	Neighborhood
MF	GO:0090422	thiamine pyrophosphate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Neighborhood
BP	GO:0098656	anion transmembrane transport	IEP	Neighborhood
BP	GO:0098657	import into cell	IEP	Neighborhood
MF	GO:1901474	azole transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Neighborhood
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G20220

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation