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  5. MA_10436733g0010

MA_10436733g0010


Description : pre-60S ribosomal subunit assembly factor (RPF1)


Gene families : OG0005658 (Archaeplastida) Phylogenetic Tree(s): OG0005658_tree ,
OG_05_0006541 (LandPlants) Phylogenetic Tree(s): OG_05_0006541_tree ,
OG_06_0006711 (SeedPlants) Phylogenetic Tree(s): OG_06_0006711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436733g0010
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AT4G01560 MEE49 Ribosomal RNA processing Brix domain protein 0.05 Archaeplastida
Cpa|evm.model.tig00000405.29 No alias No description available 0.02 Archaeplastida
Cre04.g218850 No alias No description available 0.02 Archaeplastida
Gb_30986 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.08 Archaeplastida
LOC_Os06g04600.1 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.03 Archaeplastida
Mp4g09960.1 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.09 Archaeplastida
Pp3c1_10040V3.1 No alias Ribosomal RNA processing Brix domain protein 0.04 Archaeplastida
Solyc11g066280.3.1 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007109 Brix 124 309
No external refs found!