AT5G20560

Description : Glycosyl hydrolase superfamily protein

Gene families : OG0000017 (Archaeplastida) Phylogenetic Tree(s): OG0000017_tree ,
OG_05_0000153 (LandPlants) Phylogenetic Tree(s): OG_05_0000153_tree ,
OG_06_0015190 (SeedPlants) Phylogenetic Tree(s): OG_06_0015190_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G20560
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00053p00181340	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AT1G30080	No alias	Glycosyl hydrolase superfamily protein	0.04	Archaeplastida
GSVIVT01021499001	No alias	Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01033545001	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.03	Archaeplastida
Gb_00761	No alias	Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g10660.1	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.05	Archaeplastida
LOC_Os03g12620.1	No alias	Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os03g46660.1	No alias	Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os03g51240.2	No alias	Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os04g33640.1	No alias	Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os06g04080.1	No alias	Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os07g13580.1	No alias	Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum...	0.02	Archaeplastida
LOC_Os09g32550.1	No alias	Probable glucan endo-1,3-beta-glucosidase A6...	0.03	Archaeplastida
LOC_Os11g47820.1	No alias	Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum...	0.05	Archaeplastida
MA_228746g0010	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.02	Archaeplastida
Mp2g08760.1	No alias	Probable glucan endo-1,3-beta-glucosidase A6...	0.03	Archaeplastida
Mp7g03930.1	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.02	Archaeplastida
Mp7g16830.1	No alias	Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis...	0.02	Archaeplastida
Pp3c21_17800V3.1	No alias	O-Glycosyl hydrolases family 17 protein	0.02	Archaeplastida
Pp3c24_590V3.1	No alias	O-Glycosyl hydrolases family 17 protein	0.04	Archaeplastida
Pp3c4_11830V3.1	No alias	O-Glycosyl hydrolases family 17 protein	0.02	Archaeplastida
Smo156981	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.02	Archaeplastida
Solyc02g070450.2.1	No alias	Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis...	0.04	Archaeplastida
Solyc06g073710.4.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc11g068440.2.1	No alias	Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis...	0.04	Archaeplastida
Solyc11g071520.2.1	No alias	Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e015990_P001	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.03	Archaeplastida
Zm00001e031539_P001	No alias	Lichenase-2 (Fragment) OS=Hordeum vulgare...	0.03	Archaeplastida
Zm00001e038513_P001	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Neighborhood
MF	GO:0003951	NAD+ kinase activity	IEP	Neighborhood
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005675	transcription factor TFIIH holo complex	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006741	NADP biosynthetic process	IEP	Neighborhood
BP	GO:0006783	heme biosynthetic process	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
MF	GO:0008327	methyl-CpG binding	IEP	Neighborhood
MF	GO:0008378	galactosyltransferase activity	IEP	Neighborhood
MF	GO:0010428	methyl-CpNpG binding	IEP	Neighborhood
MF	GO:0010429	methyl-CpNpN binding	IEP	Neighborhood
MF	GO:0010488	UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity	IEP	Neighborhood
BP	GO:0010493	Lewis a epitope biosynthetic process	IEP	Neighborhood
CC	GO:0015030	Cajal body	IEP	Neighborhood
MF	GO:0016289	CoA hydrolase activity	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
CC	GO:0032806	carboxy-terminal domain protein kinase complex	IEP	Neighborhood
MF	GO:0035250	UDP-galactosyltransferase activity	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0042168	heme metabolic process	IEP	Neighborhood
MF	GO:0042736	NADH kinase activity	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
MF	GO:0047617	acyl-CoA hydrolase activity	IEP	Neighborhood
BP	GO:0051568	histone H3-K4 methylation	IEP	Neighborhood
MF	GO:0052635	C-20 gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
BP	GO:0080188	RNA-directed DNA methylation	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Neighborhood
CC	GO:1902911	protein kinase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000490	Glyco_hydro_17	34	336

External Links

No external refs found!

AT5G20560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation