MA_10437077g0010


Description : exoribonuclease (RNase R)


Gene families : OG0005570 (Archaeplastida) Phylogenetic Tree(s): OG0005570_tree ,
OG_05_0007028 (LandPlants) Phylogenetic Tree(s): OG_05_0007028_tree ,
OG_06_0009663 (SeedPlants) Phylogenetic Tree(s): OG_06_0009663_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437077g0010
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cre12.g500650 No alias RNA processing.organelle machineries.ribonuclease... 0.01 Archaeplastida
GSVIVT01034161001 No alias RNA processing.organelle machineries.ribonuclease... 0.04 Archaeplastida
Gb_33852 No alias exoribonuclease (RNase R) 0.07 Archaeplastida
Gb_33853 No alias exoribonuclease (RNase R) 0.08 Archaeplastida
LOC_Os01g62440.1 No alias exoribonuclease (RNase R) 0.02 Archaeplastida
Mp3g07060.1 No alias exoribonuclease (RNase R) 0.05 Archaeplastida
Smo145357 No alias RNA processing.organelle machineries.ribonuclease... 0.03 Archaeplastida
Solyc09g010870.4.1 No alias exoribonuclease (RNase R) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!