MA_10437243g0010


Description : endoribonuclease component DCL1 of DCL1-HYL1 miRNA biogenesis complex


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0004811 (LandPlants) Phylogenetic Tree(s): OG_05_0004811_tree ,
OG_06_0006379 (SeedPlants) Phylogenetic Tree(s): OG_06_0006379_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437243g0010
Cluster HCCA: Cluster_435

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.12 Archaeplastida
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.04 Archaeplastida
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.1 Archaeplastida
Cpa|evm.model.tig00000741.30 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00000741.31 No alias No description available 0.01 Archaeplastida
Cre02.g141000 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre07.g345900 No alias No description available 0.02 Archaeplastida
GSVIVT01027462001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
GSVIVT01035494001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Gb_34256 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 Archaeplastida
Gb_34257 No alias Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.06 Archaeplastida
LOC_Os01g68120.1 No alias endoribonuclease (DCL3) 0.03 Archaeplastida
LOC_Os03g02970.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.05 Archaeplastida
LOC_Os04g43050.1 No alias endoribonuclease (DCL4) 0.04 Archaeplastida
LOC_Os10g34430.1 No alias endoribonuclease (DCL3) 0.02 Archaeplastida
MA_10432726g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.08 Archaeplastida
Mp7g12090.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.07 Archaeplastida
Pp3c1_24950V3.1 No alias dicer-like 1 0.02 Archaeplastida
Pp3c2_15900V3.1 No alias dicer-like 1 0.04 Archaeplastida
Smo444049 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Smo74321 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Smo86110 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g005030.4.1 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 Archaeplastida
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.03 Archaeplastida
Zm00001e000158_P001 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.06 Archaeplastida
Zm00001e012492_P003 No alias Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003100 PAZ_dom 253 383
IPR000999 RNase_III_dom 421 571
IPR000999 RNase_III_dom 647 685
No external refs found!