1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_10437243g0020

MA_10437243g0020


Description : Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana (sp|q9sp32|dcl1_arath : 1093.0)


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0004811 (LandPlants) Phylogenetic Tree(s): OG_05_0004811_tree ,
OG_06_0006379 (SeedPlants) Phylogenetic Tree(s): OG_06_0006379_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437243g0020
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00015000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
AT1G01040 DCL1, CAF,... dicer-like 1 0.12 Archaeplastida
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.05 Archaeplastida
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.1 Archaeplastida
Cpa|evm.model.tig00000741.31 No alias No description available 0.02 Archaeplastida
Cre07.g345900 No alias No description available 0.03 Archaeplastida
GSVIVT01001045001 No alias RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.03 Archaeplastida
GSVIVT01035494001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
Gb_34256 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 Archaeplastida
Gb_34257 No alias Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.08 Archaeplastida
LOC_Os01g68120.1 No alias endoribonuclease (DCL3) 0.04 Archaeplastida
LOC_Os03g02970.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.04 Archaeplastida
LOC_Os04g43050.1 No alias endoribonuclease (DCL4) 0.07 Archaeplastida
MA_10432726g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.06 Archaeplastida
Mp7g12090.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.05 Archaeplastida
Pp3c1_24950V3.1 No alias dicer-like 1 0.03 Archaeplastida
Pp3c23_3450V3.1 No alias dicer-like 3 0.03 Archaeplastida
Pp3c2_15900V3.1 No alias dicer-like 1 0.05 Archaeplastida
Smo444049 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Smo74321 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 Archaeplastida
Smo86110 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.04 Archaeplastida
Solyc07g005030.4.1 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 Archaeplastida
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.03 Archaeplastida
Zm00001e000158_P001 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.07 Archaeplastida
Zm00001e041209_P001 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 1056 1129
IPR001650 Helicase_C 864 981
IPR006935 Helicase/UvrB_N 461 628
No external refs found!