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  5. MA_108607g0010

MA_108607g0010


Description : component RPL6 of LSU proteome component


Gene families : OG0002580 (Archaeplastida) Phylogenetic Tree(s): OG0002580_tree ,
OG_05_0002755 (LandPlants) Phylogenetic Tree(s): OG_05_0002755_tree ,
OG_06_0003200 (SeedPlants) Phylogenetic Tree(s): OG_06_0003200_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_108607g0010
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00218700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.33 Archaeplastida
AT1G18540 No alias Ribosomal protein L6 family protein 0.42 Archaeplastida
AT1G74050 No alias Ribosomal protein L6 family protein 0.22 Archaeplastida
AT1G74060 No alias Ribosomal protein L6 family protein 0.19 Archaeplastida
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
GSVIVT01032041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01033532001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.29 Archaeplastida
Gb_01604 No alias component RPL6 of LSU proteome component 0.2 Archaeplastida
LOC_Os02g37862.1 No alias component RPL6 of LSU proteome component 0.32 Archaeplastida
LOC_Os04g39700.1 No alias component RPL6 of LSU proteome component 0.34 Archaeplastida
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.38 Archaeplastida
Pp3c14_4100V3.1 No alias Ribosomal protein L6 family protein 0.13 Archaeplastida
Pp3c14_4160V3.1 No alias Ribosomal protein L6 family protein 0.26 Archaeplastida
Pp3c1_24300V3.1 No alias Ribosomal protein L6 family protein 0.13 Archaeplastida
Pp3c2_13300V3.1 No alias Ribosomal protein L6 family protein 0.19 Archaeplastida
Smo270686 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 Archaeplastida
Solyc04g014720.4.1 No alias component RPL6 of LSU proteome component 0.12 Archaeplastida
Solyc05g054070.4.1 No alias component RPL6 of LSU proteome component 0.18 Archaeplastida
Solyc11g012110.2.1 No alias component RPL6 of LSU proteome component 0.31 Archaeplastida
Zm00001e014979_P001 No alias component RPL6 of LSU proteome component 0.25 Archaeplastida
Zm00001e022840_P001 No alias component RPL6 of LSU proteome component 0.25 Archaeplastida
Zm00001e022841_P001 No alias component RPL6 of LSU proteome component 0.24 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005568 Ribosomal_L6_N 2 57
IPR000915 60S_ribosomal_L6E 125 231
No external refs found!