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  5. MA_111225g0010

MA_111225g0010


Description : Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana (sp|p0c894|pp143_arath : 489.0)


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_111225g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.04 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
GSVIVT01031896001 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 Archaeplastida
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.06 Archaeplastida
Gb_30066 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.05 Archaeplastida
MA_139384g0010 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.08 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 Archaeplastida
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.04 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc03g007390.4.1 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 Archaeplastida
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.07 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 466 514
IPR002885 Pentatricopeptide_repeat 234 283
IPR002885 Pentatricopeptide_repeat 164 213
IPR002885 Pentatricopeptide_repeat 350 393
IPR002885 Pentatricopeptide_repeat 535 579
IPR002885 Pentatricopeptide_repeat 412 443
IPR002885 Pentatricopeptide_repeat 134 161
IPR002885 Pentatricopeptide_repeat 318 341
IPR002885 Pentatricopeptide_repeat 609 638
No external refs found!