MA_111908g0010

Description : pre-mRNA splicing factor (SPF30)

Gene families : OG0006022 (Archaeplastida) Phylogenetic Tree(s): OG0006022_tree ,
OG_05_0006558 (LandPlants) Phylogenetic Tree(s): OG_05_0006558_tree ,
OG_06_0010600 (SeedPlants) Phylogenetic Tree(s): OG_06_0010600_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_111908g0010
Cluster	HCCA: Cluster_503

Target	Alias	Description	ECC score	Gene Family Method
AT2G02570	No alias	nucleic acid binding;RNA binding	0.03	Archaeplastida
Cre02.g106550	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	Archaeplastida
GSVIVT01023145001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.05	Archaeplastida
Pp3c10_3582V3.1	No alias	nucleic acid binding;RNA binding	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0016791	phosphatase activity	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010304	Survival_motor_neuron	56	119

External Links

No external refs found!

MA_111908g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation