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  5. MA_113509g0010

MA_113509g0010


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_113509g0010
Cluster HCCA: Cluster_291

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00193200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01000175001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_28587 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os02g49840.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_133455g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_9972589g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c17_5920V3.1 No alias K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
Smo113962 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Smo69980 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!