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  5. MA_114047g0010

MA_114047g0010


Description : Flowering time control protein FCA OS=Arabidopsis thaliana (sp|o04425|fca_arath : 244.0)


Gene families : OG0001519 (Archaeplastida) Phylogenetic Tree(s): OG0001519_tree ,
OG_05_0004668 (LandPlants) Phylogenetic Tree(s): OG_05_0004668_tree ,
OG_06_0005506 (SeedPlants) Phylogenetic Tree(s): OG_06_0005506_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_114047g0010
Cluster HCCA: Cluster_400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00168380 evm_27.TU.AmTr_v1... Flowering time control protein FCA OS=Arabidopsis thaliana 0.05 Archaeplastida
Cre03.g177200 No alias RNA-binding protein BRN1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_00863 No alias no description available(sp|b8bcz8|fca_orysi : 290.0) 0.06 Archaeplastida
Gb_05124 No alias no description available(sp|b8bcz8|fca_orysi : 224.0) 0.05 Archaeplastida
Gb_06455 No alias RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_12352 No alias Flowering time control protein FCA OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os09g03610.1 No alias no description available(sp|q6k271|fca_orysj : 775.0) 0.04 Archaeplastida
Solyc01g058450.3.1 No alias Flowering time control protein FCA OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e009433_P002 No alias no description available(sp|b8bcz8|fca_orysi : 625.0) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001202 WW_dom 587 612
IPR000504 RRM_dom 130 193
IPR000504 RRM_dom 39 101
No external refs found!