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  5. MA_11517g0010

MA_11517g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 564.0)


Gene families : OG0005512 (Archaeplastida) Phylogenetic Tree(s): OG0005512_tree ,
OG_05_0092612 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0073451 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_11517g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_18840 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_27979 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
MA_8741g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.06 Archaeplastida
Smo104027 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 Archaeplastida
Smo10568 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
Smo109820 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
Smo125156 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.02 Archaeplastida
Smo88015 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 148 181
IPR002885 Pentatricopeptide_repeat 444 491
IPR002885 Pentatricopeptide_repeat 55 88
IPR002885 Pentatricopeptide_repeat 211 258
IPR002885 Pentatricopeptide_repeat 343 390
IPR002885 Pentatricopeptide_repeat 90 119
IPR002885 Pentatricopeptide_repeat 522 542
IPR002885 Pentatricopeptide_repeat 286 306
IPR002885 Pentatricopeptide_repeat 312 339
No external refs found!