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  5. MA_12056g0010

MA_12056g0010


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0092642 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0073486 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12056g0010
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00153780 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00077p00063420 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00110p00103570 evm_27.TU.AmTr_v1... Expansin-A4 OS=Arabidopsis thaliana 0.06 Archaeplastida
AT3G29030 EXP5, ATHEXP... expansin A5 0.02 Archaeplastida
GSVIVT01028215001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Gb_01504 No alias alpha-class expansin 0.04 Archaeplastida
Gb_01958 No alias alpha-class expansin 0.03 Archaeplastida
Gb_07436 No alias Expansin-A4 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Gb_34121 No alias alpha-class expansin 0.02 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp1g14140.1 No alias alpha-class expansin 0.01 Archaeplastida
Mp3g06900.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g09650.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09770.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g10120.1 No alias alpha-class expansin 0.01 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.01 Archaeplastida
Pp3c24_15400V3.1 No alias expansin A15 0.01 Archaeplastida
Smo143857 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.01 Archaeplastida
Smo409954 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Smo78615 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo90332 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Solyc09g018020.3.1 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e000429_P001 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 32 96
No external refs found!