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  5. MA_122608g0010

MA_122608g0010


Description : SCL28/30/33 RNA splicing factor


Gene families : OG0001329 (Archaeplastida) Phylogenetic Tree(s): OG0001329_tree ,
OG_05_0001146 (LandPlants) Phylogenetic Tree(s): OG_05_0001146_tree ,
OG_06_0001172 (SeedPlants) Phylogenetic Tree(s): OG_06_0001172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_122608g0010
Cluster HCCA: Cluster_492

Target Alias Description ECC score Gene Family Method Actions
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.03 Archaeplastida
Cpa|evm.model.tig00000402.16 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Cre13.g586916 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01001344001 No alias No description available 0.03 Archaeplastida
GSVIVT01016562001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
GSVIVT01022010001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Gb_06441 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os07g43950.1 No alias SCL28/30/33 RNA splicing factor 0.02 Archaeplastida
Mp4g01880.1 No alias SCL28/30/33 RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 181
No external refs found!