1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G25300

AT5G25300


Description : CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast hits to 224 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).


Gene families : OG0002951 (Archaeplastida) Phylogenetic Tree(s): OG0002951_tree ,
OG_05_0001985 (LandPlants) Phylogenetic Tree(s): OG_05_0001985_tree ,
OG_06_0001108 (SeedPlants) Phylogenetic Tree(s): OG_06_0001108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G25300
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G10110 No alias F-box family protein 0.03 Archaeplastida
AT2G03560 No alias F-box family protein with a domain of unknown function (DUF295) 0.04 Archaeplastida
AT2G04810 No alias Protein of unknown function (DUF295) 0.11 Archaeplastida
AT2G05970 No alias F-box family protein with a domain of unknown function (DUF295) 0.08 Archaeplastida
AT3G03726 No alias Protein of unknown function (DUF295) 0.07 Archaeplastida
AT3G03730 No alias F-box family protein with a domain of unknown function (DUF295) 0.1 Archaeplastida
AT3G22345 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.09 Archaeplastida
AT4G10820 No alias F-box family protein 0.04 Archaeplastida
AT4G22060 No alias F-box family protein with a domain of unknown function (DUF295) 0.07 Archaeplastida
AT4G22170 No alias F-box family protein with a domain of unknown function (DUF295) 0.02 Archaeplastida
AT5G38270 No alias F-box family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP Neighborhood
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015695 organic cation transport IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0072488 ammonium transmembrane transport IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 413 442
No external refs found!