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  5. MA_12748g0020

MA_12748g0020


Description : Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana (sp|q9saj5|pp133_arath : 505.0)


Gene families : OG0009632 (Archaeplastida) Phylogenetic Tree(s): OG0009632_tree ,
OG_05_0009626 (LandPlants) Phylogenetic Tree(s): OG_05_0009626_tree ,
OG_06_0007907 (SeedPlants) Phylogenetic Tree(s): OG_06_0007907_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12748g0020
Cluster HCCA: Cluster_403

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01033259001 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.05 Archaeplastida
LOC_Os09g02260.1 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.02 Archaeplastida
Zm00001e012678_P001 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 451 500
IPR002885 Pentatricopeptide_repeat 639 688
IPR002885 Pentatricopeptide_repeat 311 360
IPR002885 Pentatricopeptide_repeat 382 429
IPR002885 Pentatricopeptide_repeat 521 570
IPR002885 Pentatricopeptide_repeat 785 805
IPR002885 Pentatricopeptide_repeat 856 880
IPR002885 Pentatricopeptide_repeat 279 307
IPR002885 Pentatricopeptide_repeat 821 849
IPR002885 Pentatricopeptide_repeat 246 274
No external refs found!