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  5. MA_12806g0020

MA_12806g0020


Description : protein factor (NERD) of non-canonical RdDM pathway


Gene families : OG0000906 (Archaeplastida) Phylogenetic Tree(s): OG0000906_tree ,
OG_05_0000582 (LandPlants) Phylogenetic Tree(s): OG_05_0000582_tree ,
OG_06_0011518 (SeedPlants) Phylogenetic Tree(s): OG_06_0011518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12806g0020
Cluster HCCA: Cluster_520

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00244500 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 19... 0.02 Archaeplastida
AMTR_s00099p00073140 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 19... 0.02 Archaeplastida
Gb_13136 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Archaeplastida
LOC_Os09g36090.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 Archaeplastida
LOC_Os10g36810.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.02 Archaeplastida
Solyc02g084510.3.1 No alias Zinc finger CCCH domain-containing protein 44... 0.05 Archaeplastida
Solyc02g084520.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g033630.3.1 No alias Zinc finger CCCH domain-containing protein 44... 0.04 Archaeplastida
Solyc11g062220.2.1 No alias Zinc finger CCCH domain-containing protein 19... 0.04 Archaeplastida
Zm00001e000091_P002 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Archaeplastida
Zm00001e007419_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e012555_P003 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 Archaeplastida
Zm00001e019791_P001 No alias protein factor (NERD) of non-canonical RdDM pathway 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003169 GYF 349 387
No external refs found!