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  5. MA_129805g0010

MA_129805g0010


Description : Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana (sp|q9sva5|pp357_arath : 521.0)


Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0092695 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0073554 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_129805g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Gb_11039 No alias RNA editing factor (CRR21) 0.03 Archaeplastida
Gb_16072 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_25868 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_27291 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
Gb_35467 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_38897 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_130999g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_137736g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 114 161
IPR002885 Pentatricopeptide_repeat 641 686
IPR002885 Pentatricopeptide_repeat 344 392
IPR002885 Pentatricopeptide_repeat 213 259
IPR002885 Pentatricopeptide_repeat 539 586
IPR002885 Pentatricopeptide_repeat 176 211
IPR002885 Pentatricopeptide_repeat 312 341
IPR002885 Pentatricopeptide_repeat 420 446
IPR002885 Pentatricopeptide_repeat 614 639
IPR002885 Pentatricopeptide_repeat 479 508
IPR002885 Pentatricopeptide_repeat 714 739
IPR002885 Pentatricopeptide_repeat 448 477
IPR002885 Pentatricopeptide_repeat 25 46
No external refs found!