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  5. MA_13022g0010

MA_13022g0010


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 543.0)


Gene families : OG0006958 (Archaeplastida) Phylogenetic Tree(s): OG0006958_tree ,
OG_05_0008870 (LandPlants) Phylogenetic Tree(s): OG_05_0008870_tree ,
OG_06_0013870 (SeedPlants) Phylogenetic Tree(s): OG_06_0013870_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_13022g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_23085 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_33311 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.1 Archaeplastida
MA_450924g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Smo114085 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 593 619
IPR002885 Pentatricopeptide_repeat 525 548
IPR002885 Pentatricopeptide_repeat 349 394
IPR002885 Pentatricopeptide_repeat 248 295
IPR002885 Pentatricopeptide_repeat 450 496
IPR002885 Pentatricopeptide_repeat 118 165
IPR002885 Pentatricopeptide_repeat 86 116
No external refs found!