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  5. MA_131324g0010

MA_131324g0010


Description : Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana (sp|q3e9f0|pp392_arath : 372.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_131324g0010
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.04 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.02 Archaeplastida
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
GSVIVT01034953001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.04 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.04 Archaeplastida
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.05 Archaeplastida
Solyc02g077650.2.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
Solyc09g014210.3.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.05 Archaeplastida
Zm00001e028030_P001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 485 510
IPR002885 Pentatricopeptide_repeat 341 390
IPR002885 Pentatricopeptide_repeat 236 285
IPR002885 Pentatricopeptide_repeat 199 229
IPR002885 Pentatricopeptide_repeat 408 439
IPR002885 Pentatricopeptide_repeat 303 334
IPR033443 PPR_long 73 198
No external refs found!