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  5. MA_132593g0020

MA_132593g0020


Description : Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana (sp|q9fps4|ubp23_arath : 134.0)


Gene families : OG0000242 (Archaeplastida) Phylogenetic Tree(s): OG0000242_tree ,
OG_05_0002311 (LandPlants) Phylogenetic Tree(s): OG_05_0002311_tree ,
OG_06_0029983 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_132593g0020
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020918.7 No alias Protein degradation.peptidase families.cysteine-type... 0.01 Archaeplastida
GSVIVT01001911001 No alias No description available 0.04 Archaeplastida
GSVIVT01001912001 No alias Protein degradation.peptidase families.cysteine-type... 0.02 Archaeplastida
GSVIVT01014079001 No alias Protein degradation.peptidase families.cysteine-type... 0.02 Archaeplastida
GSVIVT01038082001 No alias Protein degradation.peptidase families.cysteine-type... 0.05 Archaeplastida
Gb_38396 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida
LOC_Os02g14730.1 No alias deubiquitinase (UBP15-21) 0.02 Archaeplastida
LOC_Os05g43480.1 No alias deubiquitinase (UBP25) 0.02 Archaeplastida
LOC_Os08g37350.1 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida
LOC_Os09g28940.1 No alias deubiquitinase (UBP15-21) 0.04 Archaeplastida
MA_717g0010 No alias deubiquitinase (UBP15-21) 0.04 Archaeplastida
Pp3c5_25690V3.1 No alias ubiquitin-specific protease 18 0.02 Archaeplastida
Solyc08g069050.3.1 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida
Zm00001e022516_P001 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida
Zm00001e024878_P003 No alias deubiquitinase (UBP15-21) 0.04 Archaeplastida
Zm00001e027381_P003 No alias deubiquitinase (UBP25) 0.03 Archaeplastida
Zm00001e030428_P001 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA Interproscan
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 275 333
IPR001394 Peptidase_C19_UCH 143 272
No external refs found!