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  5. MA_13389g0020

MA_13389g0020


Description : helicase (SEN1)


Gene families : OG0000652 (Archaeplastida) Phylogenetic Tree(s): OG0000652_tree ,
OG_05_0004656 (LandPlants) Phylogenetic Tree(s): OG_05_0004656_tree ,
OG_06_0005772 (SeedPlants) Phylogenetic Tree(s): OG_06_0005772_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_13389g0020
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00239150 evm_27.TU.AmTr_v1... Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00025p00188660 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
AMTR_s00119p00113940 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT4G15570 MAA3 P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
AT4G30100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Archaeplastida
Cpa|evm.model.tig00000053.4 No alias Regulator of nonsense transcripts 1 homolog... 0.02 Archaeplastida
Cre07.g342450 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01009001001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01029557001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
LOC_Os09g32190.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os10g02930.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_208026g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
Pp3c10_25870V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Pp3c19_7860V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Solyc03g124010.3.1 No alias helicase (SEN1) 0.03 Archaeplastida
Solyc04g072830.4.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc04g072840.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e002590_P001 No alias no hits & (original description: none) 0.11 Archaeplastida
Zm00001e012950_P003 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!