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  5. MA_136498g0010

MA_136498g0010


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 634.0)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_136498g0010
Cluster HCCA: Cluster_308

Target Alias Description ECC score Gene Family Method Actions
AT2G15690 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_02613 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_10270 No alias RNA editing factor (MEF8). RNA editing factor (BLX) 0.05 Archaeplastida
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_14391 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_15797 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_18978 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.12 Archaeplastida
Gb_28765 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_31111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_31794 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
Gb_33367 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
Gb_38824 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_858608g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo107192 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo92492 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Zm00001e015695_P001 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 Archaeplastida
Zm00001e026664_P002 No alias RNA editing factor (BLX) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 779 903
IPR002885 Pentatricopeptide_repeat 316 344
IPR002885 Pentatricopeptide_repeat 680 704
IPR002885 Pentatricopeptide_repeat 119 145
IPR002885 Pentatricopeptide_repeat 419 445
IPR002885 Pentatricopeptide_repeat 288 314
IPR002885 Pentatricopeptide_repeat 448 476
IPR002885 Pentatricopeptide_repeat 479 507
IPR002885 Pentatricopeptide_repeat 182 210
IPR002885 Pentatricopeptide_repeat 345 393
IPR002885 Pentatricopeptide_repeat 213 260
IPR002885 Pentatricopeptide_repeat 606 654
IPR002885 Pentatricopeptide_repeat 508 554
No external refs found!