MA_137810g0010


Description : Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana (sp|q9lmy5|ppr41_arath : 401.0)


Gene families : OG0011533 (Archaeplastida) Phylogenetic Tree(s): OG0011533_tree ,
OG_05_0011433 (LandPlants) Phylogenetic Tree(s): OG_05_0011433_tree ,
OG_06_0011536 (SeedPlants) Phylogenetic Tree(s): OG_06_0011536_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_137810g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT1G13630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
LOC_Os10g33874.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 495 524
IPR002885 Pentatricopeptide_repeat 152 177
IPR002885 Pentatricopeptide_repeat 382 415
IPR002885 Pentatricopeptide_repeat 592 624
IPR002885 Pentatricopeptide_repeat 208 240
IPR002885 Pentatricopeptide_repeat 246 295
IPR002885 Pentatricopeptide_repeat 316 365
IPR002885 Pentatricopeptide_repeat 526 575
IPR002885 Pentatricopeptide_repeat 631 680
IPR002885 Pentatricopeptide_repeat 422 469
No external refs found!