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MA_138689g0010


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 608.0)


Gene families : OG0031250 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0029189 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0027655 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_138689g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Gb_27329 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 744 868
IPR002885 Pentatricopeptide_repeat 129 156
IPR002885 Pentatricopeptide_repeat 158 186
IPR002885 Pentatricopeptide_repeat 543 565
IPR002885 Pentatricopeptide_repeat 273 300
IPR002885 Pentatricopeptide_repeat 571 617
IPR002885 Pentatricopeptide_repeat 369 415
IPR002885 Pentatricopeptide_repeat 470 516
No external refs found!