- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RNA degradation surveillance factor (SOP1)
Gene families : OG0007457 (Archaeplastida) Phylogenetic Tree(s): OG0007457_tree ,
OG_05_0007905 (LandPlants) Phylogenetic Tree(s): OG_05_0007905_tree ,
OG_06_0008680 (SeedPlants) Phylogenetic Tree(s): OG_06_0008680_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_140138g0020 | |
| Cluster | HCCA: Cluster_437 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G21580 | No alias | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.05 | Archaeplastida | |
| GSVIVT01008802001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.07 | Archaeplastida | |
| Gb_37874 | No alias | RNA degradation surveillance factor (SOP1) | 0.03 | Archaeplastida | |
| Mp6g05720.1 | No alias | RNA degradation surveillance factor (SOP1) | 0.03 | Archaeplastida | |
| Pp3c2_14590V3.1 | No alias | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.07 | Archaeplastida | |
| Solyc04g057990.4.1 | No alias | RNA degradation surveillance factor (SOP1) | 0.05 | Archaeplastida | |
| Zm00001e037509_P004 | No alias | RNA degradation surveillance factor (SOP1) | 0.06 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003774 | motor activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| BP | GO:0006810 | transport | IEP | Neighborhood |
| BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
| BP | GO:0008104 | protein localization | IEP | Neighborhood |
| MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
| BP | GO:0015031 | protein transport | IEP | Neighborhood |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015405 | P-P-bond-hydrolysis-driven transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0015833 | peptide transport | IEP | Neighborhood |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Neighborhood |
| CC | GO:0016459 | myosin complex | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | Neighborhood |
| CC | GO:0030117 | membrane coat | IEP | Neighborhood |
| CC | GO:0030118 | clathrin coat | IEP | Neighborhood |
| CC | GO:0030120 | vesicle coat | IEP | Neighborhood |
| CC | GO:0030125 | clathrin vesicle coat | IEP | Neighborhood |
| CC | GO:0030130 | clathrin coat of trans-Golgi network vesicle | IEP | Neighborhood |
| CC | GO:0030132 | clathrin coat of coated pit | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
| MF | GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | IEP | Neighborhood |
| BP | GO:0042886 | amide transport | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043248 | proteasome assembly | IEP | Neighborhood |
| MF | GO:0043492 | ATPase activity, coupled to movement of substances | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044425 | membrane part | IEP | Neighborhood |
| CC | GO:0044430 | cytoskeletal part | IEP | Neighborhood |
| CC | GO:0044431 | Golgi apparatus part | IEP | Neighborhood |
| CC | GO:0044433 | cytoplasmic vesicle part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044459 | plasma membrane part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
| BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
| BP | GO:0051179 | localization | IEP | Neighborhood |
| BP | GO:0051234 | establishment of localization | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| MF | GO:0060090 | molecular adaptor activity | IEP | Neighborhood |
| BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
| BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
| CC | GO:0098796 | membrane protein complex | IEP | Neighborhood |
| CC | GO:0098797 | plasma membrane protein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |