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  5. MA_141102g0010

MA_141102g0010


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 154.0)


Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0001171 (LandPlants) Phylogenetic Tree(s): OG_05_0001171_tree ,
OG_06_0001131 (SeedPlants) Phylogenetic Tree(s): OG_06_0001131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_141102g0010
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
GSVIVT01016872001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_29426 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
Gb_29428 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os10g33230.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Pp3c1_33540V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Solyc02g093340.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 Archaeplastida
Solyc03g005680.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 Archaeplastida
Solyc03g121710.2.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Solyc07g045240.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 Archaeplastida
Solyc09g090520.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e004612_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e012709_P005 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014461_P003 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e024336_P003 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e024934_P002 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e030652_P001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e037155_P004 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 44 111
IPR000504 RRM_dom 131 198
No external refs found!