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  5. MA_141118g0010

MA_141118g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 615.0)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_141118g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AT2G15690 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_07106 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_14391 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_15797 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_18978 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_28765 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_31794 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_33367 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_38824 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
LOC_Os08g05750.1 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.04 Archaeplastida
MA_858608g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Solyc01g108180.4.1 No alias RNA editing factor (MEF8). RNA editing factor (BLX) 0.02 Archaeplastida
Zm00001e015695_P001 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 694 818
IPR002885 Pentatricopeptide_repeat 520 569
IPR002885 Pentatricopeptide_repeat 211 258
IPR002885 Pentatricopeptide_repeat 420 467
IPR002885 Pentatricopeptide_repeat 117 141
IPR002885 Pentatricopeptide_repeat 329 358
IPR002885 Pentatricopeptide_repeat 596 619
IPR002885 Pentatricopeptide_repeat 360 388
IPR002885 Pentatricopeptide_repeat 391 418
IPR002885 Pentatricopeptide_repeat 187 209
IPR002885 Pentatricopeptide_repeat 304 328
No external refs found!