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AT5G27920


Description : F-box family protein


Gene families : OG0002025 (Archaeplastida) Phylogenetic Tree(s): OG0002025_tree ,
OG_05_0001725 (LandPlants) Phylogenetic Tree(s): OG_05_0001725_tree ,
OG_06_0011398 (SeedPlants) Phylogenetic Tree(s): OG_06_0011398_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G27920

Target Alias Description ECC score Gene Family Method Actions
MA_10426597g0010 No alias F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp5g23660.1 No alias F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c11_7220V3.1 No alias RNI-like superfamily protein 0.1 Archaeplastida
Smo75506 No alias F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009407 toxin catabolic process RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0001666 response to hypoxia IEP Neighborhood
BP GO:0003032 detection of oxygen IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004462 lactoylglutathione lyase activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0007568 aging IEP Neighborhood
BP GO:0007623 circadian rhythm IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0009593 detection of chemical stimulus IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0009746 response to hexose IEP Neighborhood
BP GO:0009750 response to fructose IEP Neighborhood
BP GO:0009873 ethylene-activated signaling pathway IEP Neighborhood
BP GO:0010029 regulation of seed germination IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010082 regulation of root meristem growth IEP Neighborhood
BP GO:0010119 regulation of stomatal movement IEP Neighborhood
BP GO:0010150 leaf senescence IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016805 dipeptidase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031537 regulation of anthocyanin metabolic process IEP Neighborhood
BP GO:0032870 cellular response to hormone stimulus IEP Neighborhood
BP GO:0034284 response to monosaccharide IEP Neighborhood
BP GO:0036293 response to decreased oxygen levels IEP Neighborhood
BP GO:0048511 rhythmic process IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:0070482 response to oxygen levels IEP Neighborhood
BP GO:0070483 detection of hypoxia IEP Neighborhood
BP GO:0071310 cellular response to organic substance IEP Neighborhood
BP GO:0071368 cellular response to cytokinin stimulus IEP Neighborhood
BP GO:0071495 cellular response to endogenous stimulus IEP Neighborhood
BP GO:0080050 regulation of seed development IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080113 regulation of seed growth IEP Neighborhood
BP GO:0090693 plant organ senescence IEP Neighborhood
BP GO:1900140 regulation of seedling development IEP Neighborhood
BP GO:2000280 regulation of root development IEP Neighborhood
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 452 476
IPR001611 Leu-rich_rpt 200 219
IPR001611 Leu-rich_rpt 349 373
IPR001611 Leu-rich_rpt 479 501
IPR001611 Leu-rich_rpt 426 449
No external refs found!