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  5. AT5G28450

AT5G28450


Description : Chlorophyll A-B binding family protein


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0017361 (LandPlants) Phylogenetic Tree(s): OG_05_0017361_tree ,
OG_06_0016890 (SeedPlants) Phylogenetic Tree(s): OG_06_0016890_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G28450
Cluster HCCA: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020858001 No alias Chlorophyll a-b binding protein 40, chloroplastic... 0.06 Archaeplastida
Gb_05853 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Gb_27633 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Gb_41161 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.01 Archaeplastida
Mp2g13460.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.01 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.01 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.01 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.01 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 Archaeplastida
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g09340.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.01 Archaeplastida
Pp3c10_25371V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36220V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c4_11854V3.1 No alias photosystem I light harvesting complex gene 5 0.02 Archaeplastida
Pp3c5_22920V3.1 No alias photosystem II light harvesting complex gene 2.2 0.02 Archaeplastida
Pp3c5_7150V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc12g006140.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.03 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0015979 photosynthesis ISS Interproscan
MF GO:0016168 chlorophyll binding ISS Interproscan
CC GO:0030076 light-harvesting complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0008794 arsenate reductase (glutaredoxin) activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009534 chloroplast thylakoid IEP Neighborhood
CC GO:0009535 chloroplast thylakoid membrane IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009637 response to blue light IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009718 anthocyanin-containing compound biosynthetic process IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009765 photosynthesis, light harvesting IEP Neighborhood
BP GO:0009768 photosynthesis, light harvesting in photosystem I IEP Neighborhood
BP GO:0009769 photosynthesis, light harvesting in photosystem II IEP Neighborhood
CC GO:0009782 photosystem I antenna complex IEP Neighborhood
CC GO:0009783 photosystem II antenna complex IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
BP GO:0010114 response to red light IEP Neighborhood
BP GO:0010155 regulation of proton transport IEP Neighborhood
BP GO:0010196 nonphotochemical quenching IEP Neighborhood
BP GO:0010218 response to far red light IEP Neighborhood
CC GO:0010287 plastoglobule IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
CC GO:0016602 CCAAT-binding factor complex IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030611 arsenate reductase activity IEP Neighborhood
MF GO:0030613 oxidoreductase activity, acting on phosphorus or arsenic in donors IEP Neighborhood
MF GO:0030614 oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
CC GO:0031976 plastid thylakoid IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046283 anthocyanin-containing compound metabolic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
CC GO:0055035 plastid thylakoid membrane IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
BP GO:1904062 regulation of cation transmembrane transport IEP Neighborhood
BP GO:1990066 energy quenching IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 87 143
No external refs found!