AT5G28490 (LSH1)

Aliases : LSH1

Description : Protein of unknown function (DUF640)

Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G28490
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00052610	evm_27.TU.AmTr_v1...	Protein G1-like2 OS=Oryza sativa subsp. japonica	0.02	Archaeplastida
AT1G78815	LSH7	Protein of unknown function (DUF640)	0.03	Archaeplastida
GSVIVT01020708001	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10...	0.04	Archaeplastida
GSVIVT01021215001	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10...	0.03	Archaeplastida
GSVIVT01023521001	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4...	0.04	Archaeplastida
LOC_Os02g07030.1	No alias	Protein G1-like1 OS=Oryza sativa subsp. japonica...	0.05	Archaeplastida
LOC_Os02g41460.1	No alias	Protein G1-like3 OS=Oryza sativa subsp. indica...	0.05	Archaeplastida
LOC_Os02g56610.1	No alias	Protein G1-like6 OS=Oryza sativa subsp. indica...	0.07	Archaeplastida
LOC_Os04g43580.2	No alias	Protein G1-like3 OS=Oryza sativa subsp. indica...	0.03	Archaeplastida
LOC_Os05g28040.1	No alias	Protein G1-like9 OS=Oryza sativa subsp. indica...	0.02	Archaeplastida
LOC_Os06g46030.1	No alias	Protein G1-like2 OS=Oryza sativa subsp. indica...	0.06	Archaeplastida
Solyc02g069510.1.1	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5...	0.02	Archaeplastida
Solyc05g055020.4.1	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1...	0.03	Archaeplastida
Solyc06g083860.2.1	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.04	Archaeplastida
Solyc09g025280.1.1	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.1	Archaeplastida
Solyc09g090180.1.1	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.04	Archaeplastida
Solyc10g007310.1.1	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10...	0.03	Archaeplastida
Zm00001e004570_P001	No alias	Protein G1-like4 OS=Oryza sativa subsp. indica...	0.04	Archaeplastida
Zm00001e012687_P001	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3...	0.04	Archaeplastida
Zm00001e013711_P001	No alias	Protein G1-like2 OS=Oryza sativa subsp. indica...	0.04	Archaeplastida
Zm00001e016177_P002	No alias	Protein G1-like6 OS=Oryza sativa subsp. indica...	0.04	Archaeplastida
Zm00001e019403_P001	No alias	Protein G1-like7 OS=Oryza sativa subsp. indica...	0.03	Archaeplastida
Zm00001e023022_P001	No alias	Protein G1-like3 OS=Oryza sativa subsp. indica...	0.02	Archaeplastida
Zm00001e023639_P001	No alias	Protein G1-like6 OS=Oryza sativa subsp. indica...	0.09	Archaeplastida
Zm00001e028824_P001	No alias	Protein G1-like8 OS=Oryza sativa subsp. indica...	0.04	Archaeplastida
Zm00001e031512_P001	No alias	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5...	0.03	Archaeplastida
Zm00001e032784_P001	No alias	Protein G1 OS=Oryza sativa subsp. japonica...	0.08	Archaeplastida
Zm00001e037775_P001	No alias	Protein G1-like2 OS=Oryza sativa subsp. indica...	0.07	Archaeplastida
Zm00001e041238_P001	No alias	Protein G1-like3 OS=Oryza sativa subsp. indica...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IMP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	IGI	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010114	response to red light	IGI	Interproscan
BP	GO:0010218	response to far red light	IGI	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0040007	growth	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000060	protein import into nucleus, translocation	IEP	Neighborhood
BP	GO:0001708	cell fate specification	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009820	alkaloid metabolic process	IEP	Neighborhood
BP	GO:0009821	alkaloid biosynthetic process	IEP	Neighborhood
BP	GO:0009823	cytokinin catabolic process	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009934	regulation of meristem structural organization	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0009954	proximal/distal pattern formation	IEP	Neighborhood
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010016	shoot system morphogenesis	IEP	Neighborhood
BP	GO:0010022	meristem determinacy	IEP	Neighborhood
BP	GO:0010074	maintenance of meristem identity	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010076	maintenance of floral meristem identity	IEP	Neighborhood
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	Neighborhood
BP	GO:0010219	regulation of vernalization response	IEP	Neighborhood
BP	GO:0010220	positive regulation of vernalization response	IEP	Neighborhood
BP	GO:0010254	nectary development	IEP	Neighborhood
BP	GO:0010338	leaf formation	IEP	Neighborhood
BP	GO:0010434	bract formation	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010582	floral meristem determinacy	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Neighborhood
MF	GO:0019209	kinase activator activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0019827	stem cell population maintenance	IEP	Neighborhood
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0035265	organ growth	IEP	Neighborhood
BP	GO:0040009	regulation of growth rate	IEP	Neighborhood
BP	GO:0042447	hormone catabolic process	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
BP	GO:0045165	cell fate commitment	IEP	Neighborhood
BP	GO:0045168	cell-cell signaling involved in cell fate commitment	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045927	positive regulation of growth	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046620	regulation of organ growth	IEP	Neighborhood
BP	GO:0046622	positive regulation of organ growth	IEP	Neighborhood
MF	GO:0046982	protein heterodimerization activity	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0048438	floral whorl development	IEP	Neighborhood
BP	GO:0048439	flower morphogenesis	IEP	Neighborhood
BP	GO:0048445	carpel morphogenesis	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
BP	GO:0048513	animal organ development	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0048584	positive regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048639	positive regulation of developmental growth	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051094	positive regulation of developmental process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:0098727	maintenance of cell number	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1902347	response to strigolactone	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006936	ALOG_dom	15	138

External Links

No external refs found!

AT5G28490 (LSH1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation