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  5. MA_15061g0010

MA_15061g0010


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 456.0)


Gene families : OG0013909 (Archaeplastida) Phylogenetic Tree(s): OG0013909_tree ,
OG_05_0011972 (LandPlants) Phylogenetic Tree(s): OG_05_0011972_tree ,
OG_06_0012004 (SeedPlants) Phylogenetic Tree(s): OG_06_0012004_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_15061g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_02723 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_24666 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
MA_3947g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_5151g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 226 254
IPR002885 Pentatricopeptide_repeat 257 305
IPR002885 Pentatricopeptide_repeat 359 407
IPR002885 Pentatricopeptide_repeat 126 173
IPR002885 Pentatricopeptide_repeat 433 457
IPR002885 Pentatricopeptide_repeat 201 225
IPR002885 Pentatricopeptide_repeat 1 23
IPR002885 Pentatricopeptide_repeat 69 95
No external refs found!