AT5G35400


Description : Pseudouridine synthase family protein


Gene families : OG0007758 (Archaeplastida) Phylogenetic Tree(s): OG0007758_tree ,
OG_05_0007963 (LandPlants) Phylogenetic Tree(s): OG_05_0007963_tree ,
OG_06_0005803 (SeedPlants) Phylogenetic Tree(s): OG_06_0005803_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G35400
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
MA_10435159g0010 No alias tRNA pseudouridine synthase (TruA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006730 one-carbon metabolic process RCA Interproscan
MF GO:0009982 pseudouridine synthase activity ISS Interproscan
MF GO:0009982 pseudouridine synthase activity TAS Interproscan
Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0031053 primary miRNA processing IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048571 long-day photoperiodism IEP Neighborhood
BP GO:0048574 long-day photoperiodism, flowering IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR020097 PsdUridine_synth_TruA_a/b_dom 312 409
No external refs found!