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  5. MA_15913g0010

MA_15913g0010


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 519.0)


Gene families : OG0008685 (Archaeplastida) Phylogenetic Tree(s): OG0008685_tree ,
OG_05_0092784 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0073668 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_15913g0010
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
Gb_04402 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_28171 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.11 Archaeplastida
Gb_28759 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
MA_44936g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.09 Archaeplastida
MA_5858185g0010 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 585 631
IPR002885 Pentatricopeptide_repeat 313 355
IPR002885 Pentatricopeptide_repeat 448 496
IPR002885 Pentatricopeptide_repeat 214 251
IPR002885 Pentatricopeptide_repeat 113 160
IPR002885 Pentatricopeptide_repeat 686 733
IPR002885 Pentatricopeptide_repeat 287 311
IPR002885 Pentatricopeptide_repeat 416 446
IPR002885 Pentatricopeptide_repeat 761 785
IPR002885 Pentatricopeptide_repeat 553 582
IPR002885 Pentatricopeptide_repeat 387 412
IPR002885 Pentatricopeptide_repeat 660 685
IPR002885 Pentatricopeptide_repeat 523 547
No external refs found!