MA_165810g0010

Description : Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana (sp|q8lds4|nakr1_arath : 95.5)

Gene families : OG0000049 (Archaeplastida) Phylogenetic Tree(s): OG0000049_tree ,
OG_05_0000136 (LandPlants) Phylogenetic Tree(s): OG_05_0000136_tree ,
OG_06_0000808 (SeedPlants) Phylogenetic Tree(s): OG_06_0000808_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_165810g0010
Cluster	HCCA: Cluster_257

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01019700001	No alias	Heavy metal-associated isoprenylated plant protein 30...	0.05	Archaeplastida
Gb_09171	No alias	Heavy metal-associated isoprenylated plant protein 20...	0.04	Archaeplastida
Gb_12907	No alias	Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis...	0.02	Archaeplastida
Gb_21296	No alias	Heavy metal-associated isoprenylated plant protein 30...	0.03	Archaeplastida
Gb_38910	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os02g32814.1	No alias	copper chaperone (CCH)	0.03	Archaeplastida
LOC_Os03g06080.1	No alias	Heavy metal-associated isoprenylated plant protein 27...	0.03	Archaeplastida
LOC_Os10g39210.1	No alias	Heavy metal-associated isoprenylated plant protein 30...	0.02	Archaeplastida
MA_40458g0010	No alias	no hits & (original description: none)	0.07	Archaeplastida
MA_525649g0010	No alias	Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis...	0.04	Archaeplastida
MA_94570g0010	No alias	Heavy metal-associated isoprenylated plant protein 30...	0.05	Archaeplastida
Mp5g20370.1	No alias	copper chaperone (CCH)	0.02	Archaeplastida
Mp7g16230.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp8g01830.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Smo409960	No alias	No description available	0.03	Archaeplastida
Solyc04g007630.2.1	No alias	Heavy metal-associated isoprenylated plant protein 20...	0.03	Archaeplastida
Zm00001e004204_P001	No alias	Heavy metal-associated isoprenylated plant protein 23...	0.02	Archaeplastida
Zm00001e028833_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0030001	metal ion transport	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004525	ribonuclease III activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006121	HMA_dom	182	232

External Links

No external refs found!

MA_165810g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation