MA_168127g0010

Description : component TAF4 of TFIId basal transcription regulation complex

Gene families : OG0003546 (Archaeplastida) Phylogenetic Tree(s): OG0003546_tree ,
OG_05_0002570 (LandPlants) Phylogenetic Tree(s): OG_05_0002570_tree ,
OG_06_0002068 (SeedPlants) Phylogenetic Tree(s): OG_06_0002068_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_168127g0010
Cluster	HCCA: Cluster_393

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01009365001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.12	Archaeplastida
Gb_41115	No alias	component TAF4 of TFIId basal transcription regulation complex	0.02	Archaeplastida
LOC_Os02g43750.1	No alias	component TAF4 of TFIId basal transcription regulation complex	0.03	Archaeplastida
Mp2g09230.1	No alias	component TAF4 of TFIId basal transcription regulation complex	0.07	Archaeplastida
Pp3c4_10340V3.1	No alias	TBP-associated factor 4	0.02	Archaeplastida
Solyc04g078050.3.1	No alias	component TAF4 of TFIId basal transcription regulation complex	0.03	Archaeplastida
Zm00001e002074_P001	No alias	component TAF4 of TFIId basal transcription regulation complex	0.02	Archaeplastida
Zm00001e016810_P001	No alias	component TAF4 of TFIId basal transcription regulation complex	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription factor complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044798	nuclear transcription factor complex	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription factor complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0016482	cytosolic transport	IEP	Neighborhood
CC	GO:0030906	retromer, cargo-selective complex	IEP	Neighborhood
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007900	TAF4	450	516

External Links

No external refs found!

MA_168127g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation