MA_1682g0010


Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 116.0)


Gene families : OG0000639 (Archaeplastida) Phylogenetic Tree(s): OG0000639_tree ,
OG_05_0000548 (LandPlants) Phylogenetic Tree(s): OG_05_0000548_tree ,
OG_06_0000334 (SeedPlants) Phylogenetic Tree(s): OG_06_0000334_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_1682g0010
Cluster HCCA: Cluster_439

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G22330 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.09 Archaeplastida
AT1G22910 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT1G33470 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT1G78260 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Archaeplastida
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT5G11412 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 Archaeplastida
AT5G53720 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
Gb_07133 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Gb_30439 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 Archaeplastida
Gb_39058 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.01 Archaeplastida
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os01g65550.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g72834.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g51890.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os03g17760.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os06g11730.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida
MA_10436590g0030 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida
MA_3307g0020 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Mp8g04430.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Smo100311 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc04g049920.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Solyc04g074310.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e019085_P001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e023856_P001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e030837_P006 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 27 82
No external refs found!