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  5. MA_168323g0010

MA_168323g0010


Description : RNA chaperone (RZ1|GR-RBP)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree ,
OG_06_0003301 (SeedPlants) Phylogenetic Tree(s): OG_06_0003301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_168323g0010
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00256900 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00030p00132070 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00030p00198740 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.04 Archaeplastida
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Archaeplastida
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Archaeplastida
Cre17.g729150 No alias No description available 0.01 Archaeplastida
GSVIVT01001672001 No alias Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016195001 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01021024001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01033666001 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_26296 No alias RNA editing factor (ORRM) 0.03 Archaeplastida
Mp1g21200.1 No alias RNA editing factor (ORRM) 0.03 Archaeplastida
Mp6g08160.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Pp3c4_6610V3.1 No alias glycine-rich RNA-binding protein 3 0.02 Archaeplastida
Solyc01g104840.4.1 No alias RNA chaperone (RZ1|GR-RBP) 0.06 Archaeplastida
Solyc10g047130.2.1 No alias RNA chaperone (RZ1|GR-RBP) 0.06 Archaeplastida
Solyc10g081180.2.1 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.07 Archaeplastida
Solyc11g008210.3.1 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e006287_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Zm00001e028481_P002 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 Archaeplastida
Zm00001e033010_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida
Zm00001e040294_P001 No alias RNA editing factor (ORRM) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 81 150
IPR001878 Znf_CCHC 188 202
No external refs found!