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  5. AT5G37560

AT5G37560


Description : RING/U-box superfamily protein


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0004760 (LandPlants) Phylogenetic Tree(s): OG_05_0004760_tree ,
OG_06_0003098 (SeedPlants) Phylogenetic Tree(s): OG_06_0003098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G37560
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00103340 evm_27.TU.AmTr_v1... ATP-dependent RNA helicase DEAH12, chloroplastic... 0.02 Archaeplastida
AT2G26130 No alias RING/U-box protein with C6HC-type zinc finger 0.03 Archaeplastida
AT3G43180 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00021035.20 No alias No description available 0.02 Archaeplastida
GSVIVT01016056001 No alias Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os09g26470.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
Smo415256 No alias No description available 0.02 Archaeplastida
Smo48392 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.04 Archaeplastida
Solyc01g110100.4.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0005351 carbohydrate:proton symporter activity IEP Neighborhood
MF GO:0005402 carbohydrate:cation symporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0009299 mRNA transcription IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Neighborhood
MF GO:0015293 symporter activity IEP Neighborhood
MF GO:0015294 solute:cation symporter activity IEP Neighborhood
MF GO:0015295 solute:proton symporter activity IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
CC GO:0031350 intrinsic component of plastid membrane IEP Neighborhood
CC GO:0031351 integral component of plastid membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 59 147
IPR002867 IBR_dom 249 314
IPR002867 IBR_dom 329 383
No external refs found!