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  5. AT5G37570

AT5G37570


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG0005064 (Archaeplastida) Phylogenetic Tree(s): OG0005064_tree ,
OG_05_0005093 (LandPlants) Phylogenetic Tree(s): OG_05_0005093_tree ,
OG_06_0003390 (SeedPlants) Phylogenetic Tree(s): OG_06_0003390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G37570
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01029336001 No alias Pentatricopeptide repeat-containing protein At1g74630... 0.03 Archaeplastida
LOC_Os01g65840.1 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.02 Archaeplastida
LOC_Os02g41560.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
LOC_Os04g33840.1 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
LOC_Os05g01635.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.11 Archaeplastida
MA_29579g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc08g079640.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.03 Archaeplastida
Solyc11g006940.3.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.05 Archaeplastida
Solyc11g012570.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.07 Archaeplastida
Zm00001e008183_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e019067_P001 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0000266 mitochondrial fission IEP Neighborhood
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009553 embryo sac development IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009561 megagametogenesis IEP Neighborhood
BP GO:0010928 regulation of auxin mediated signaling pathway IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0031538 negative regulation of anthocyanin metabolic process IEP Neighborhood
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048530 fruit morphogenesis IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0060321 acceptance of pollen IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0071396 cellular response to lipid IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 177 206
IPR002885 Pentatricopeptide_repeat 76 104
IPR002885 Pentatricopeptide_repeat 149 175
IPR002885 Pentatricopeptide_repeat 239 263
IPR002885 Pentatricopeptide_repeat 209 238
IPR002885 Pentatricopeptide_repeat 444 468
IPR002885 Pentatricopeptide_repeat 268 305
IPR002885 Pentatricopeptide_repeat 370 416
No external refs found!