AT5G37640 (UBQ9)

Aliases : UBQ9

Description : ubiquitin 9

Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000511 (LandPlants) Phylogenetic Tree(s): OG_05_0000511_tree ,
OG_06_0000425 (SeedPlants) Phylogenetic Tree(s): OG_06_0000425_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G37640
Cluster	HCCA: Cluster_157

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zm00001e034164_P001	No alias	ubiquitin-fold protein (RUB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005622	intracellular	TAS	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	ISS	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
MF	GO:0004632	phosphopantothenate--cysteine ligase activity	IEP	Neighborhood
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
MF	GO:0008517	folic acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015884	folic acid transport	IEP	Neighborhood
BP	GO:0015893	drug transport	IEP	Neighborhood
BP	GO:0015936	coenzyme A metabolic process	IEP	Neighborhood
BP	GO:0015937	coenzyme A biosynthetic process	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0042335	cuticle development	IEP	Neighborhood
BP	GO:0051180	vitamin transport	IEP	Neighborhood
BP	GO:0051181	cofactor transport	IEP	Neighborhood
BP	GO:0072337	modified amino acid transport	IEP	Neighborhood
MF	GO:0072349	modified amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin_dom	157	227
IPR000626	Ubiquitin_dom	233	305
IPR000626	Ubiquitin_dom	8	76
IPR000626	Ubiquitin_dom	81	152

External Links

No external refs found!

AT5G37640 (UBQ9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation