AT5G37800 (ATRSL1, RSL1)

Aliases : ATRSL1, RSL1

Description : RHD SIX-LIKE 1

Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G37800
Cluster	HCCA: Cluster_92

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00250370	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
AMTR_s00066p00183410	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AT1G09530	PIF3, POC1, PAP3	phytochrome interacting factor 3	0.05	Archaeplastida
AT1G27740	RSL4	root hair defective 6-like 4	0.05	Archaeplastida
AT2G14760	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT2G43010	SRL2, PIF4, AtPIF4	phytochrome interacting factor 4	0.04	Archaeplastida
AT2G46970	PIL1	phytochrome interacting factor 3-like 1	0.07	Archaeplastida
AT3G21330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT3G50330	HEC2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT3G59060	PIL6, PIF5	phytochrome interacting factor 3-like 6	0.04	Archaeplastida
AT3G62090	PIL2, PIF6	phytochrome interacting factor 3-like 2	0.02	Archaeplastida
AT4G00120	GT140, IND1, IND, EDA33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT4G33880	RSL2	ROOT HAIR DEFECTIVE 6-LIKE 2	0.05	Archaeplastida
AT4G36930	SPT	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.01	Archaeplastida
AT5G67060	HEC1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.07	Archaeplastida
GSVIVT01018164001	No alias	Transcription factor UNE10 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01018165001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
GSVIVT01030846001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
Gb_27302	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Gb_27869	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g02110.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os01g51140.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os02g48060.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os03g10770.1	No alias	transcription factor (bHLH)	0.06	Archaeplastida
LOC_Os06g06900.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os06g47980.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os07g39940.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os08g01700.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os12g39850.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
LOC_Os12g40590.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os12g40730.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_100071g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_29186g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_29441g0010	No alias	transcription factor (bHLH)	0.06	Archaeplastida
MA_306658g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_83500g0010	No alias	transcription factor (bHLH)	0.07	Archaeplastida
MA_88831g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Mp6g21470.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Pp3c14_16620V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c16_21590V3.1	No alias	ROOT HAIR DEFECTIVE 6-LIKE 2	0.02	Archaeplastida
Pp3c27_8050V3.1	No alias	ROOT HAIR DEFECTIVE 6-LIKE 2	0.04	Archaeplastida
Pp3c3_8460V3.1	No alias	ROOT HAIR DEFECTIVE 6-LIKE 2	0.02	Archaeplastida
Pp3c4_24380V3.1	No alias	ROOT HAIR DEFECTIVE 6-LIKE 2	0.03	Archaeplastida
Smo405220	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.01	Archaeplastida
Solyc01g107140.3.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc02g091440.2.1	No alias	transcription factor (bHLH)	0.08	Archaeplastida
Solyc02g093280.2.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc04g077960.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc06g008030.3.1	No alias	transcription factor (bHLH). PIF red/far-red light...	0.02	Archaeplastida
Solyc12g088380.1.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e006917_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e015610_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e019392_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e021883_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e025656_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e027758_P002	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e032280_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e038765_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
CC	GO:0000323	lytic vacuole	IEP	Neighborhood
MF	GO:0003838	sterol 24-C-methyltransferase activity	IEP	Neighborhood
MF	GO:0004536	deoxyribonuclease activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004871	obsolete signal transducer activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
MF	GO:0008169	C-methyltransferase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008422	beta-glucosidase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
MF	GO:0008825	cyclopropane-fatty-acyl-phospholipid synthase activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009630	gravitropism	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009746	response to hexose	IEP	Neighborhood
BP	GO:0009749	response to glucose	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	Neighborhood
CC	GO:0009925	basal plasma membrane	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	Neighborhood
BP	GO:0010453	regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010455	positive regulation of cell fate commitment	IEP	Neighborhood
MF	GO:0015926	glucosidase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0019137	thioglucosidase activity	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
BP	GO:0034284	response to monosaccharide	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0045165	cell fate commitment	IEP	Neighborhood
BP	GO:0045597	positive regulation of cell differentiation	IEP	Neighborhood
BP	GO:0046685	response to arsenic-containing substance	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
BP	GO:0048443	stamen development	IEP	Neighborhood
BP	GO:0048766	root hair initiation	IEP	Neighborhood
BP	GO:0048829	root cap development	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
BP	GO:2000012	regulation of auxin polar transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	216	257

External Links

No external refs found!

AT5G37800 (ATRSL1, RSL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation