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  5. MA_175359g0010

MA_175359g0010


Description : Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana (sp|q9fje6|pp437_arath : 439.0)


Gene families : OG0001630 (Archaeplastida) Phylogenetic Tree(s): OG0001630_tree ,
OG_05_0001046 (LandPlants) Phylogenetic Tree(s): OG_05_0001046_tree ,
OG_06_0000527 (SeedPlants) Phylogenetic Tree(s): OG_06_0000527_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_175359g0010
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
MA_10433091g0010 No alias Pentatricopeptide repeat-containing protein At1g62930,... 0.03 Archaeplastida
MA_47344g0010 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.04 Archaeplastida
MA_78481g0010 No alias Pentatricopeptide repeat-containing protein At1g63130,... 0.05 Archaeplastida
MA_914400g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.04 Archaeplastida
MA_9542585g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.06 Archaeplastida
MA_959553g0010 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 388 409
IPR002885 Pentatricopeptide_repeat 742 772
IPR002885 Pentatricopeptide_repeat 180 212
IPR002885 Pentatricopeptide_repeat 637 667
IPR002885 Pentatricopeptide_repeat 363 386
IPR002885 Pentatricopeptide_repeat 485 534
IPR002885 Pentatricopeptide_repeat 781 829
IPR002885 Pentatricopeptide_repeat 415 464
IPR002885 Pentatricopeptide_repeat 219 268
IPR002885 Pentatricopeptide_repeat 297 346
IPR002885 Pentatricopeptide_repeat 44 92
IPR002885 Pentatricopeptide_repeat 555 604
IPR002885 Pentatricopeptide_repeat 676 725
IPR002885 Pentatricopeptide_repeat 114 163
No external refs found!