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  5. MA_178429g0010

MA_178429g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 547.0)


Gene families : OG0012771 (Archaeplastida) Phylogenetic Tree(s): OG0012771_tree ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_178429g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_26130 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.13 Archaeplastida
Gb_40121 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_44339g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 449 496
IPR002885 Pentatricopeptide_repeat 130 178
IPR002885 Pentatricopeptide_repeat 550 592
IPR002885 Pentatricopeptide_repeat 325 356
IPR002885 Pentatricopeptide_repeat 205 232
IPR002885 Pentatricopeptide_repeat 296 323
IPR002885 Pentatricopeptide_repeat 624 648
IPR002885 Pentatricopeptide_repeat 359 387
IPR002885 Pentatricopeptide_repeat 234 263
IPR002885 Pentatricopeptide_repeat 524 549
IPR002885 Pentatricopeptide_repeat 389 418
IPR002885 Pentatricopeptide_repeat 265 293
No external refs found!