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  5. AT5G38730

AT5G38730


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0008885 (Archaeplastida) Phylogenetic Tree(s): OG0008885_tree ,
OG_05_0009763 (LandPlants) Phylogenetic Tree(s): OG_05_0009763_tree ,
OG_06_0005429 (SeedPlants) Phylogenetic Tree(s): OG_06_0005429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G38730
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00059960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g38730... 0.02 Archaeplastida
Gb_27163 No alias Pentatricopeptide repeat-containing protein At5g38730... 0.12 Archaeplastida
Gb_30544 No alias Pentatricopeptide repeat-containing protein At2g32630... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0008285 negative regulation of cell proliferation IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0010101 post-embryonic root morphogenesis IEP Neighborhood
BP GO:0010102 lateral root morphogenesis IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 303 334
IPR002885 Pentatricopeptide_repeat 268 299
IPR002885 Pentatricopeptide_repeat 398 454
IPR002885 Pentatricopeptide_repeat 518 544
IPR002885 Pentatricopeptide_repeat 171 199
IPR002885 Pentatricopeptide_repeat 485 513
IPR002885 Pentatricopeptide_repeat 202 250
IPR002885 Pentatricopeptide_repeat 340 389
No external refs found!