1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G39350

AT5G39350


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G39350
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.02 Archaeplastida
AT1G77150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Cpa|evm.model.tig00021312.67 No alias No description available 0.01 Archaeplastida
GSVIVT01023818001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.01 Archaeplastida
GSVIVT01025607001 No alias Pentatricopeptide repeat-containing protein At5g42450,... 0.03 Archaeplastida
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
LOC_Os03g63560.1 No alias OTP70 plastidial RNA splicing factor 0.01 Archaeplastida
MA_16823g0010 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
MA_40517g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.01 Archaeplastida
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.02 Archaeplastida
Smo30095 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.02 Archaeplastida
Solyc07g005740.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
Solyc11g071370.1.1 No alias RNA editing factor (CLB19) 0.02 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IEP Neighborhood
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
CC GO:0000120 RNA polymerase I transcription factor complex IEP Neighborhood
CC GO:0000164 protein phosphatase type 1 complex IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0003991 acetylglutamate kinase activity IEP Neighborhood
MF GO:0004124 cysteine synthase activity IEP Neighborhood
MF GO:0004564 beta-fructofuranosidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0004737 pyruvate decarboxylase activity IEP Neighborhood
MF GO:0004845 uracil phosphoribosyltransferase activity IEP Neighborhood
MF GO:0004849 uridine kinase activity IEP Neighborhood
BP GO:0005987 sucrose catabolic process IEP Neighborhood
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Neighborhood
BP GO:0006222 UMP biosynthetic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006349 regulation of gene expression by genetic imprinting IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006525 arginine metabolic process IEP Neighborhood
BP GO:0006526 arginine biosynthetic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006591 ornithine metabolic process IEP Neighborhood
BP GO:0006651 diacylglycerol biosynthetic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006722 triterpenoid metabolic process IEP Neighborhood
BP GO:0007021 tubulin complex assembly IEP Neighborhood
MF GO:0008195 phosphatidate phosphatase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0008655 pyrimidine-containing compound salvage IEP Neighborhood
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
BP GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009313 oligosaccharide catabolic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009911 positive regulation of flower development IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010138 pyrimidine ribonucleotide salvage IEP Neighborhood
MF GO:0010283 pinoresinol reductase activity IEP Neighborhood
MF GO:0015099 nickel cation transmembrane transporter activity IEP Neighborhood
BP GO:0015675 nickel cation transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016104 triterpenoid biosynthetic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
MF GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016929 SUMO-specific protease activity IEP Neighborhood
MF GO:0019206 nucleoside kinase activity IEP Neighborhood
BP GO:0019742 pentacyclic triterpenoid metabolic process IEP Neighborhood
BP GO:0019745 pentacyclic triterpenoid biosynthetic process IEP Neighborhood
BP GO:0022619 generative cell differentiation IEP Neighborhood
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP Neighborhood
CC GO:0031307 integral component of mitochondrial outer membrane IEP Neighborhood
BP GO:0031425 chloroplast RNA processing IEP Neighborhood
BP GO:0032262 pyrimidine nucleotide salvage IEP Neighborhood
CC GO:0032592 integral component of mitochondrial membrane IEP Neighborhood
BP GO:0032881 regulation of polysaccharide metabolic process IEP Neighborhood
MF GO:0034618 arginine binding IEP Neighborhood
BP GO:0042450 arginine biosynthetic process via ornithine IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0043097 pyrimidine nucleoside salvage IEP Neighborhood
BP GO:0043173 nucleotide salvage IEP Neighborhood
BP GO:0043174 nucleoside salvage IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044206 UMP salvage IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0044770 cell cycle phase transition IEP Neighborhood
BP GO:0044772 mitotic cell cycle phase transition IEP Neighborhood
BP GO:0044843 cell cycle G1/S phase transition IEP Neighborhood
BP GO:0045962 positive regulation of development, heterochronic IEP Neighborhood
BP GO:0046049 UMP metabolic process IEP Neighborhood
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046132 pyrimidine ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0046134 pyrimidine nucleoside biosynthetic process IEP Neighborhood
BP GO:0046339 diacylglycerol metabolic process IEP Neighborhood
BP GO:0046352 disaccharide catabolic process IEP Neighborhood
BP GO:0046443 FAD metabolic process IEP Neighborhood
BP GO:0048582 positive regulation of post-embryonic development IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0051568 histone H3-K4 methylation IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
CC GO:0070860 RNA polymerase I core factor complex IEP Neighborhood
BP GO:0071514 genetic imprinting IEP Neighborhood
BP GO:0072387 flavin adenine dinucleotide metabolic process IEP Neighborhood
BP GO:0090435 protein localization to nuclear envelope IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
BP GO:2000036 regulation of stem cell population maintenance IEP Neighborhood
BP GO:2000243 positive regulation of reproductive process IEP Neighborhood
BP GO:2000904 regulation of starch metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 82 111
IPR002885 Pentatricopeptide_repeat 564 583
IPR002885 Pentatricopeptide_repeat 358 377
IPR002885 Pentatricopeptide_repeat 182 225
IPR002885 Pentatricopeptide_repeat 283 328
IPR002885 Pentatricopeptide_repeat 488 536
IPR002885 Pentatricopeptide_repeat 388 431
No external refs found!