AT5G39890

Description : Protein of unknown function (DUF1637)

Gene families : OG0000643 (Archaeplastida) Phylogenetic Tree(s): OG0000643_tree ,
OG_05_0000858 (LandPlants) Phylogenetic Tree(s): OG_05_0000858_tree ,
OG_06_0001336 (SeedPlants) Phylogenetic Tree(s): OG_06_0001336_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39890
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g092284	No alias	Plant cysteine oxidase 4 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01008048001	No alias	Plant cysteine oxidase 2 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01011353001	No alias	Plant cysteine oxidase 2 OS=Arabidopsis thaliana	0.09	Archaeplastida
GSVIVT01029951001	No alias	Plant cysteine oxidase 1 OS=Arabidopsis thaliana	0.1	Archaeplastida
Gb_07828	No alias	cysteine oxidase (PCO)	0.03	Archaeplastida
LOC_Os03g45250.1	No alias	cysteine oxidase (PCO)	0.03	Archaeplastida
LOC_Os08g37470.1	No alias	cysteine oxidase (PCO)	0.05	Archaeplastida
LOC_Os12g42860.1	No alias	cysteine oxidase (PCO)	0.06	Archaeplastida
MA_10094486g0010	No alias	cysteine oxidase (PCO)	0.05	Archaeplastida
MA_15703g0010	No alias	cysteine oxidase (PCO)	0.03	Archaeplastida
MA_7569g0010	No alias	cysteine oxidase (PCO)	0.04	Archaeplastida
Smo90722	No alias	Plant cysteine oxidase 4 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc02g067440.3.1	No alias	cysteine oxidase (PCO)	0.11	Archaeplastida
Solyc03g113130.3.1	No alias	cysteine oxidase (PCO)	0.08	Archaeplastida
Zm00001e003280_P001	No alias	cysteine oxidase (PCO)	0.05	Archaeplastida
Zm00001e003400_P001	No alias	cysteine oxidase (PCO)	0.05	Archaeplastida
Zm00001e005237_P002	No alias	cysteine oxidase (PCO)	0.08	Archaeplastida
Zm00001e032570_P002	No alias	cysteine oxidase (PCO)	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	None	Extended
BP	GO:0010089	xylem development	RCA	Interproscan
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051193	regulation of cofactor metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001076	obsolete transcription factor activity, RNA polymerase II transcription factor binding	IEP	Neighborhood
MF	GO:0004022	alcohol dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Neighborhood
CC	GO:0005801	cis-Golgi network	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008506	sucrose:proton symporter activity	IEP	Neighborhood
MF	GO:0008515	sucrose transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009061	anaerobic respiration	IEP	Neighborhood
MF	GO:0009669	sucrose:cation symporter activity	IEP	Neighborhood
BP	GO:0009685	gibberellin metabolic process	IEP	Neighborhood
BP	GO:0009686	gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0009956	radial pattern formation	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
MF	GO:0015154	disaccharide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015157	oligosaccharide transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Neighborhood
BP	GO:0016101	diterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016752	sinapoyltransferase activity	IEP	Neighborhood
BP	GO:0019915	lipid storage	IEP	Neighborhood
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Neighborhood
BP	GO:0045333	cellular respiration	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0060771	phyllotactic patterning	IEP	Neighborhood
BP	GO:0060772	leaf phyllotactic patterning	IEP	Neighborhood
BP	GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR012864	PCO/ADO	78	274

External Links

No external refs found!

AT5G39890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation